I didn't know it asked those questions either. But I asked and it does for quit a while now. Not just the CT either.
You should enter the total thickness (board & sled). It also should not be asking, if you are not doing a pierced carving or cutout.
I am referring this to a software engineer that has looked into this for another customer. He may have the answer, but he won't be back in until tomorrow.
Sorry my grammar is so bad...in a hurry.
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