Y Stall, Y Jerky Motion, Y not smooth are all signs of dirty Y rails and Y bearings. It can also be wood chips in the belt.
I am posting this for the people searching this problem and adding more info and pictures.
I finished cutting 5 signs the other night and found that the last carving resulted in a error in the cut along the Y Axis. I quit for the night and the next morning though that since I had scrubbed the rails before starting the signs, that I eliminated the rails as the cause. All the Y Bearings were rolling, so I pulled the Y Motor.
I found what I had expected, the shaft of the Y Gear Box had worn letting the big gear wobble. I checked the Cut Motor Hours and it was 721. This is the 3rd machine I have replaced the Y Gear Box on out of my 4. I have replaced each one at about 700 hours using the old Z Gear Box from the Z Bundle upgrade.
So for users getting near 700 hours or even 500 hours, a inspection of the Y Gear Box could be helpful. Removing the gear box and cleaning the shaft and possible even rotating the 2 bearings front to back or even spending the 10 bucks to get replacement bearings.
I couldn't put my finger on the Bearing web site but it was posted a while back. Use Metric Measurements when ordering it.
When you attach the Gear Box to the motor, there is a trick to get the plastic gear meshed with the motor shaft properly. You can actually mount the gear box without the gear even touching the motor shaft. You can also press the gear too hard to the motor shaft leading to a future motor bearing failure. There is a happy medium to getting the proper mesh to spin the gear without binding and being too far away leading to too much slop in the gearing. This is known as backlash, the distance the motor travels when reversing directions before the gear teeth are engaged again. In my old Navy Analog Gun computer days we used a spring to pre load the gear train to minimize backlash.
So getting the gear and motor mesh is easy, just be sure to turn it a few turns after tightening the screws and don't be afraid to re adjust it.
When you mount the Y motor back in the machine in it's U Shaped slot, try to center it in the U shaped area. Once the shaft is worn, the plastic area between the belt and gear will rub on the U area causing the jerking of the Y.
Hope this helps.
AL
In picture 4 you can see the shaft just as it enters the plastic is worn thin.... The bearing must have failed....